Subnautica, because it has the worst inventory/crafting system I've ever played and inventory management is such a big part of the game. Most of the other games people are mentioning don't have crafting and resource collection as a central part of the game, so the effect is lessened. Gathering and synthesizing resources in Subnautica is so bad that it hinders me from replaying what is an almost perfect game otherwise.

Minecraft's inventory system is actually pretty good and seems well integrated into the game, so it isn't actually as noticeable.